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[Submitted on 22 Mar 2022 (v1), last revised 11 Oct 2022 (this version, v3)]

Title:Bayesian Learning of Graph Substructures

Authors:Willem van den Boom, Maria De Iorio, Alexandros Beskos
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Abstract: Graphical models provide a powerful methodology for learning the conditional independence structure in multivariate data. Inference is often focused on estimating individual edges in the latent graph. Nonetheless, there is increasing interest in inferring more complex structures, such as communities, for multiple reasons, including more effective information retrieval and better interpretability. Stochastic blockmodels offer a powerful tool to detect such structure in a network. We thus propose to exploit advances in random graph theory and embed them within the graphical models framework. A consequence of this approach is the propagation of the uncertainty in graph estimation to large-scale structure learning. We consider Bayesian nonparametric stochastic blockmodels as priors on the graph. We extend such models to consider clique-based blocks and to multiple graph settings introducing a novel prior process based on a Dependent Dirichlet process. Moreover, we devise a tailored computation strategy of Bayes factors for block structure based on the Savage-Dickey ratio to test for presence of larger structure in a graph. We demonstrate our approach in simulations as well as on real data applications in finance and transcriptomics.
Comments: 41 pages, 8 figures
Subjects: Methodology (stat.ME)
Cite as: arXiv:2203.11664 [stat.ME]
  (or arXiv:2203.11664v3 [stat.ME] for this version)
  https://doi.org/10.48550/arXiv.2203.11664
arXiv-issued DOI via DataCite
Related DOI: https://doi.org/10.1214/22-BA1338
DOI(s) linking to related resources

Submission history

From: Willem van den Boom [view email]
[v1] Tue, 22 Mar 2022 12:40:30 UTC (624 KB)
[v2] Sun, 10 Apr 2022 02:41:27 UTC (644 KB)
[v3] Tue, 11 Oct 2022 06:50:50 UTC (652 KB)
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